Scaffold Ga0208434_1026825

Overview

Basic Information

• Taxon OID: 3300025098
• Scaffold ID: Ga0208434_1026825
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1385
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F036736	Metagenome / Metatranscriptome	169	Y
F048916	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208434_10268252	F036736	GGAG	VDKLNEMLIGALAVVGGFVTKRVFNNHDSLSNRVADIEKNLLTKEDISHLERNMEMIVSHLIKKGDTP
Ga0208434_10268254	F002078	GGA	MFAGQGWFEIAGQVVLVFTAITGALPDKFVQKIPVLSTIWPIFNWLAGNVFNNINHPKGMAAAKDVEKEIDEAKAKVRERSGMPDVLDGM
Ga0208434_10268255	F048916	GGAG	MKLKLKLGSVVVCLTFLTGCSVGLLTELVAPVTNFGLGLYNADTYYSKECAWYEEIKLTQSTKQWLSDSKPPEGVVKDLAKVARNNDIYREVCD