Basic Information | |
---|---|
Taxon OID | 3300025098 Open in IMG/M |
Scaffold ID | Ga0208434_1026825 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1385 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.509 | Long. (o) | -76.198 | Alt. (m) | Depth (m) | 48 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002078 | Metagenome / Metatranscriptome | 596 | Y |
F036736 | Metagenome / Metatranscriptome | 169 | Y |
F048916 | Metagenome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208434_10268252 | F036736 | GGAG | VDKLNEMLIGALAVVGGFVTKRVFNNHDSLSNRVADIEKNLLTKEDISHLERNMEMIVSHLIKKGDTP |
Ga0208434_10268254 | F002078 | GGA | MFAGQGWFEIAGQVVLVFTAITGALPDKFVQKIPVLSTIWPIFNWLAGNVFNNINHPKGMAAAKDVEKEIDEAKAKVRERSGMPDVLDGM |
Ga0208434_10268255 | F048916 | GGAG | MKLKLKLGSVVVCLTFLTGCSVGLLTELVAPVTNFGLGLYNADTYYSKECAWYEEIKLTQSTKQWLSDSKPPEGVVKDLAKVARNNDIYREVCD |
⦗Top⦘ |