Scaffold Ga0208010_1008607

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208010_1008607

Scaffold Ga0208010_1008607

Overview

Basic Information
Taxon OID	3300025097 Open in IMG/M
Scaffold ID	Ga0208010_1008607 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2729
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-13.003	Long. (^o)	-80.809	Alt. (m)		Depth (m)	160
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010875	Metagenome	298	Y
F036280	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10086073	F010875	AGG	MTELEKLKKMLVDAHEHMRARKQKNTPTFGAMMFMLEAIVQCNAALNERKKDGQSKIQT
Ga0208010_10086075	F036280	N/A	MVNTKQKEILKKIRTLPLRKYGSAKHKKLIKEYIKYDPYFPPSKIL

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