Scaffold Ga0208010_1001343

Overview

Basic Information

• Taxon OID: 3300025097
• Scaffold ID: Ga0208010_1001343
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8281
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (34.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004103	Metagenome	453	Y
F041490	Metagenome	160	Y
F087294	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_100134311	F087294	N/A	MSKEVLESKKSALELMLSENNDLCTDYKAQIAVIDQKLEDLGKPEATPKFLDKINETITEAVEGLDLDDGVRCDFEIDYDNRVAMSDVRFEDTHDVADKIYCAVEKLFAEIRTDNS
Ga0208010_100134316	F004103	N/A	MKLIEKVKPEILEALEKDAKINYSASYKYIIASLKNVDRYRELSINEVDQLITFLPQELRPGDRIDFYFGDYLLKKEYQS
Ga0208010_10013434	F041490	N/A	MNREELKRMFLQMDCSNVPVRKEIIVDLRYLDNKHWPNYGYVEILSDGPDGYSSFSTHQEHPLRYALEMMEGDNHNDYSKYKLVIKE