NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1067388

Scaffold Ga0208011_1067388


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1067388 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)802
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010920Metagenome / Metatranscriptome297Y
F016673Metagenome245Y
F067830Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_10673881F016673N/AMISESDTEDIVIKSYVELYLKALNESKSYKFIKVIKSRMLELIKRKQLKNQTK
Ga0208011_10673882F067830GAGGMSKPKLTIVDTIDGKTLAYRIQPSVEIFPKTKKVGFTDYTYSYKEVIAIGKKLEELL
Ga0208011_10673883F010920AGGAGMSKIKKYDVLISYPIQVGAEDEEHVKEILMASPLLRDAADLTLKIVEVKDE

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