Scaffold Ga0208011_1023716

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1023716
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1555
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010950	Metagenome	297	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10237161	F010950	N/A	LYRRNSTDGASMMKIWVVRQTSTYDQETYVTTHITEKGALMTAIKTVREDMCDGFDEDEMEDHRPGLPHDPEEDLARYDRRQLQGIVQDWWEYAWEINDELQYQIYETQVTT
Ga0208011_10237163	F079212	AGGAGG	MNQHEKELIDRCIESHYNMIRMHRRAIIELSRKAIKEREWCEECFDLEIINESGRSGKV
Ga0208011_10237164	F070089	GAG	MKVGDLVKFESALERDVFETDPRIEHGLVVQISKTGHDTTSAQVMFNDGSLWWVDSGRLEVISEGR