Scaffold Ga0208011_1015454

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1015454
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2031
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018286	Metagenome	236	Y
F030886	Metagenome	184	Y
F057352	Metagenome	136	Y
F059942	Metagenome	133	Y
F067640	Metagenome	125	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_101545410	F030886	N/A	PLQGNIMSYHGTPPPDYNKTGIAVVNPLIRIEQKLRKVQDVLDNISDASILTANDLKIKIQKVLDD
Ga0208011_10154542	F057352	GAGG	MKLWVLHGTYENELFSSIHLTEKGCALAAIADILDFLSVSDEDSALQVINDCYAYTETDGEQTEAFEWDHDKLKEMSSKDLWKIFGDWTETCWERMSDRSYYIDATPQMVQA
Ga0208011_10154543	F067640	AGGAG	MIEVGSLLKMKYGNTTWLALDEIAESVLVINQKTHHKMWAAKMSFEVIG
Ga0208011_10154545	F059942	GGAGG	VKVGDLISFKPINFGLEDWSNPCIVVRQYPEPDCGLWVVWVDGIYAVMDNENYDVAYLTGSLLDETTKGG
Ga0208011_10154547	F079212	GAGG	MNKDEKELIDRCIESHYNMIRFHRRAIIDLSRKTIKESEMCTECFDFEIINESGRSGKSE
Ga0208011_10154548	F018286	GGAG	MKTLTTFVLMGVIDSHDGVFATVELNTNPASNGGSATAVMPVSAFPCEVREGRVFYVVKLHEDQDAVIVCEDKENEQRRERTD