NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1012576

Scaffold Ga0208011_1012576


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1012576 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2305
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013818Metagenome / Metatranscriptome268Y
F041710Metagenome159Y
F057671Metagenome / Metatranscriptome136Y
F075974Metagenome118Y
F093707Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208011_10125762F013818N/AMSNSVKKYHEMRQDIVDKESLYLCSEIEKALERIISYDDGMLDDKLFTKIKKPAIKLLREWHL
Ga0208011_10125763F075974AGGAMGKRLERGFYILILMGITFFLGVFYTFYKIDQRMWNEELLKARDIETRYINYKQKKYYKKSDLDLIIFGEIK
Ga0208011_10125765F093707N/AMSYKNTLRFVRIEDIRFPILEYKDNKINAKQLIEKLEQLINKYE
Ga0208011_10125767F057671N/AMSITKELDRIAFDIHNQVVEYMYEEIAKELNQSEFDYDPDNELHEYIMNQVINRFIQK
Ga0208011_10125768F041710GGAMKTKLIDEMVFDTKNDRWIFISDLKSGEFIYNNKEVKVFTTDRGYTFYQTKWPRIQISNISWTKCKETIEDRQDNAQHYAYMEHLNDQTMLEMYNNNHNNWTGD

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