Basic Information | |
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Taxon OID | 3300025096 Open in IMG/M |
Scaffold ID | Ga0208011_1012576 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2305 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -11.499 | Long. (o) | -81.405 | Alt. (m) | Depth (m) | 120 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013818 | Metagenome / Metatranscriptome | 268 | Y |
F041710 | Metagenome | 159 | Y |
F057671 | Metagenome / Metatranscriptome | 136 | Y |
F075974 | Metagenome | 118 | Y |
F093707 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208011_10125762 | F013818 | N/A | MSNSVKKYHEMRQDIVDKESLYLCSEIEKALERIISYDDGMLDDKLFTKIKKPAIKLLREWHL |
Ga0208011_10125763 | F075974 | AGGA | MGKRLERGFYILILMGITFFLGVFYTFYKIDQRMWNEELLKARDIETRYINYKQKKYYKKSDLDLIIFGEIK |
Ga0208011_10125765 | F093707 | N/A | MSYKNTLRFVRIEDIRFPILEYKDNKINAKQLIEKLEQLINKYE |
Ga0208011_10125767 | F057671 | N/A | MSITKELDRIAFDIHNQVVEYMYEEIAKELNQSEFDYDPDNELHEYIMNQVINRFIQK |
Ga0208011_10125768 | F041710 | GGA | MKTKLIDEMVFDTKNDRWIFISDLKSGEFIYNNKEVKVFTTDRGYTFYQTKWPRIQISNISWTKCKETIEDRQDNAQHYAYMEHLNDQTMLEMYNNNHNNWTGD |
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