Scaffold Ga0208011_1010945

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1010945
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2515
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → unclassified Nitrospinaceae → Nitrospinaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080023	Metagenome / Metatranscriptome	115	Y
F082546	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10109455	F080023	AGGAG	MSKIFTIQIAPVRAPYMREKQRVENTVCKKYVRGKVVYHEFRWNNPKAGRNVMYFDTPDTEAEKEPYAEKFAHRVQRAFDKAVIRFHTHYKGFRQEDEIIRVYAPYPDLAPNALITVYSAKVHEYRAHKAFLRDIVSKMNNQYRGLMGLLQRGQWDLSKDSLYLLNKYMFDLQSMCRPEHHEVVFKGDKNPLLANRR
Ga0208011_10109456	F082546	GAGG	MKIESKAIIRRRIGNIRADIKSVRNSGDTFRMIILYRQLTASLIKLENMKN