Scaffold Ga0208011_1010350

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1010350
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013818	Metagenome / Metatranscriptome	268	Y
F034895	Metagenome	173	N
F041710	Metagenome	159	Y
F075974	Metagenome	118	Y
F093707	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_101035010	F034895	N/A	MTTLLEKLRPEITEALEKNRDKYDYPVTELYNSLDTKYLYSQLSIGEVRDLTLWADIDERVWDYIDWKYGDKLFSQEAIELAI
Ga0208011_10103502	F041710	N/A	MKNKLIDEMVFDTKNDRWIFISDLKSGELVYNDKEVKVFTTDRGYTFYQTKWPRIQISNNSWDRCKETIKDRQDNAEHYAYLDHLGDESMLEMYNNNHNNWTGD
Ga0208011_10103505	F093707	N/A	MSYKNTLRFVRIEDIRYPILEYKDNKIDAKQLVEKLEKLINKYE
Ga0208011_10103508	F075974	GGAG	MKKLERGLYIIIFSAMSFFLGVFYTFYEIDQRMWNEELLKARDIETRYINYKQKKYYKKSDLDLIIFGEIK
Ga0208011_10103509	F013818	N/A	MSNSVKKYHEMRQDIVDKESLYLCSEIEKTLERIISYDDGMLDDKLFTKIKKPAIKLLKEWHL