Scaffold Ga0208011_1004626

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1004626
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4190
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013575	Metagenome	270	Y
F027810	Metagenome / Metatranscriptome	193	N
F051054	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10046262	F051054	N/A	MKTIKLTTFNDLGDCDRQDVNDLISALVRMGYEVWMADDSVCFNLGNEDVIKDEGGINNNGKN
Ga0208011_10046263	F027810	AGGGGG	MEKIKVGIDAFNELAKSHDAHVKEVERLQKELDELKKLKLVNQDGELLLECKIGDKHHQLLLEVGLNTILEKFTS
Ga0208011_10046265	F013575	AGGA	MNLTWFYFHCVLAVVILYKDYNGTLEESLDNFEKKIGLYTYVDTSHREEVPFYVPPIEEEEEIDSTYEED