Basic Information | |
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Taxon OID | 3300025096 Open in IMG/M |
Scaffold ID | Ga0208011_1002286 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6416 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (76.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -11.499 | Long. (o) | -81.405 | Alt. (m) | Depth (m) | 120 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005547 | Metagenome | 397 | Y |
F018267 | Metagenome | 236 | Y |
F053548 | Metagenome | 141 | Y |
F101902 | Metagenome | 102 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208011_100228611 | F018267 | AGG | VKVGDLISFKPKSFGDDDWSNPGIVLDSYEHDDRQTGGWKDLIWIVWIDGYKCMVNERNDDVVHLTSS |
Ga0208011_100228613 | F101902 | AGG | MKVGDLVKRRDDPTYHGIVTEVGPQETATDHGETVVRVQWNDGEVSYEFVKMLEVLSEGR |
Ga0208011_100228617 | F053548 | GGAG | MKDSGAPSIGDLVVALYDVERGLSCAGLVIEARGIECKVLWSSENHPIGWWSRSALKVISPSGPPKKFNALNNHLTT |
Ga0208011_100228624 | F005547 | AGGAG | MKVWVMQGSYEGELFSSVHLTQKGCALACISDIIEFLGVDDDETALSVMNDCFTYAETDGDQTEAIEWDQEKLKEMTSEQLWKIFAEWCEISWDRMADRSYNLDCNTVEIQA |
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