NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1002286

Scaffold Ga0208011_1002286


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1002286 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6416
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005547Metagenome397Y
F018267Metagenome236Y
F053548Metagenome141Y
F101902Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_100228611F018267AGGVKVGDLISFKPKSFGDDDWSNPGIVLDSYEHDDRQTGGWKDLIWIVWIDGYKCMVNERNDDVVHLTSS
Ga0208011_100228613F101902AGGMKVGDLVKRRDDPTYHGIVTEVGPQETATDHGETVVRVQWNDGEVSYEFVKMLEVLSEGR
Ga0208011_100228617F053548GGAGMKDSGAPSIGDLVVALYDVERGLSCAGLVIEARGIECKVLWSSENHPIGWWSRSALKVISPSGPPKKFNALNNHLTT
Ga0208011_100228624F005547AGGAGMKVWVMQGSYEGELFSSVHLTQKGCALACISDIIEFLGVDDDETALSVMNDCFTYAETDGDQTEAIEWDQEKLKEMTSEQLWKIFAEWCEISWDRMADRSYNLDCNTVEIQA

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