Scaffold Ga0208011_1000430

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000430
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16472
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (80.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F012033	Metagenome	284	Y
F014627	Metagenome	261	Y
F016673	Metagenome	245	Y
F020018	Metagenome	226	Y
F025517	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100043011	F020018	GGAG	MKMIQITKWLNPDDNTWYKGTYITTREWLMIEKERLSKLTKKRVVIQTDPKGAKAIFREKIK
Ga0208011_100043019	F016673	N/A	MVSESSLEDIVIKSYLELYLRSLNESRSHKFITLIKNRMLELIKRKQLRNQTQ
Ga0208011_100043021	F010920	GGAG	MKTFDVWLSYPIKVNAEDEDHVREIIMANEHLRNAPDLKLEIKEILNES
Ga0208011_100043025	F014627	AGGAG	MGKVKKMLEEDMRLHPELYNGHAEEEFWTQCRKEELLEREGKPPIKIIRSNKSNAKIKKR
Ga0208011_100043032	F012033	GGA	MERKLSYNKDYTHPGSIYFKYVGDITEDGAMKLQERVGYHPAGYGFYGFVFINGVARWNCSNSCD
Ga0208011_10004306	F025517	N/A	MYGVNAKLPKDYFQCHMCRITKIQEMYIWGNFAILPKHPYKEYRICKKCAIRENGKRKKLENIIDERTKQWLKSQ