NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208794_1075780

Scaffold Ga0208794_1075780


Overview

Basic Information
Taxon OID3300025093 Open in IMG/M
Scaffold IDGa0208794_1075780 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)583
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027807Metagenome / Metatranscriptome193Y
F048234Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0208794_10757801F027807GAGGMSSNQFIPPKPIKSDIIEELDSTVGQLRDLTAMKPKPTQEAHMDARLADFLELAEQDFIRGWTDWEEGIQHKEGQSEAYNAGYADCYEYENGRGE
Ga0208794_10757802F048234N/AQVNDWDEFVDELEAIEFTARAEDYDEQAKVVTLLVDRDSIDDVYHPVGGRYPIEYEGRTEWVEEVGVCVHSCKWHDHNIINAEAVCAKIEGLDYVE

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