Scaffold Ga0208794_1014462

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1014462
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1793
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026852	Metagenome	196	Y
F030873	Metagenome	184	N
F068116	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_10144622	F026852	GGA	MVSGHKKNVCQNPKCCESSTKDRYNKKLEAYQSRNAYFKPEHETSWGYSCKILEYFCTTRCANEWLETNLDNIIERQHSPKKITEKIIRQSQ
Ga0208794_10144624	F030873	GAGG	MLFKRNDKIAIVVKPKTHNGEINEKDYFTRYGEMRKDCKFLVSKNILTFWDTQKDNFRSFNLSDVVSITNLSRTPLEINKKEKEKQEREKMKGINCLSCKTRLRPDYLNQWNDNYCGDC
Ga0208794_10144625	F068116	AGG	MRKITDEELINFFNNLKEIIQAQKELNHVLHKRISNLEERLSKKEREVVDVV