Scaffold Ga0208794_1002653

Overview

Basic Information

• Taxon OID: 3300025093
• Scaffold ID: Ga0208794_1002653
• Source Dataset Name: Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6591
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (31.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Gulf of Mexico
• Coordinates
  • Lat. (^o): 28.867
  • Long. (^o): -90.467
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003601	Metagenome / Metatranscriptome	477	Y
F019817	Metagenome	227	Y
F021097	Metagenome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208794_100265310	F019817	N/A	MPAAAPVALTINQRNLYTYFLNHKKKHGDTPCFVPRLPAQSSRLEQYLQALIKLEMYGLIHVDRSSDNYTGWIMTDPKLIR
Ga0208794_100265319	F003601	AGG	MTDYTDDQLLAMAMANIGEFIHDNSPHYVLIEEDPRNEDDYDSWTYGMEVLPHDHTWQSTSIDV
Ga0208794_10026533	F021097	N/A	MSSNHFVDSCVAIILGTGVGLLGSVGMQKLLNKHYQATCHDRPGHNLIYVQGFLGDTYYCINSKYIN