NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208794_1002653

Scaffold Ga0208794_1002653


Overview

Basic Information
Taxon OID3300025093 Open in IMG/M
Scaffold IDGa0208794_1002653 Open in IMG/M
Source Dataset NameMarine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6591
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (31.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NameAtlantic Ocean: Gulf of Mexico
CoordinatesLat. (o)28.867Long. (o)-90.467Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003601Metagenome / Metatranscriptome477Y
F019817Metagenome227Y
F021097Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0208794_100265310F019817N/AMPAAAPVALTINQRNLYTYFLNHKKKHGDTPCFVPRLPAQSSRLEQYLQALIKLEMYGLIHVDRSSDNYTGWIMTDPKLIR
Ga0208794_100265319F003601AGGMTDYTDDQLLAMAMANIGEFIHDNSPHYVLIEEDPRNEDDYDSWTYGMEVLPHDHTWQSTSIDV
Ga0208794_10026533F021097N/AMSSNHFVDSCVAIILGTGVGLLGSVGMQKLLNKHYQATCHDRPGHNLIYVQGFLGDTYYCINSKYIN

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