Scaffold Ga0209616_1003410

Overview

Basic Information

• Taxon OID: 3300025091
• Scaffold ID: Ga0209616_1003410
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2312
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015062	Metagenome	257	Y
F058556	Metagenome	135	Y
F083731	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209616_10034102	F015062	N/A	MRTKTKHKVSAVAPRLSDEDVDPIEQDDIDSSSMQIIEGWLPWDPEDIADIRRLIADKMPVKQKFVIEGFLDGLSYHDMAVTEKYWRYHFSKGVEFIKKELGL
Ga0209616_10034103	F058556	AGGAG	MSHFVIEHVYNGYPMFETITGVENLDLDLFPEFQTIWICDSLEEVTAVENELRRKHNARR
Ga0209616_10034108	F083731	AGG	MNLKQLLKHAGVSNNIIKEVEKKTAKTSAQMEQEHQEKALAMTKMILNDALKYRKEHGGNTP