Scaffold Ga0209616_1000287

Overview

Basic Information

• Taxon OID: 3300025091
• Scaffold ID: Ga0209616_1000287
• Source Dataset Name: Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15136
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: USA: Indian Creek, Illinois
• Coordinates
  • Lat. (^o): 41.6655
  • Long. (^o): -87.5437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F065559	Metagenome / Metatranscriptome	127	Y
F067648	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209616_100028723	F019119	N/A	MLELSAQIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDTEIKNMIAMLESSDQENLHMVTLSIKSFRDLRVKEHGEYSKVNQAYWKIAKDYPHEILNHEVFMQTMAAK
Ga0209616_10002876	F067648	N/A	MTRDELKNLINMFQSSDAENHVVAFHAIENSPLDNNELVLLYKFSGQVFAKWKHEIPMTAQRIADVIGDEAIALSSARVLGIITNNKADKHVIETFLEFFIRDLTSMLGSIGYPMDKVDINVKIRDYGQSTES
Ga0209616_10002879	F065559	N/A	LAGFTKSNSMKEMDMIGTLVRLADLGVTGIKVTYEGSGDSGAIENVVYTAEKLKENEEDAFEDLNDLDVWGTDILNLSTLDSGLESDIAHFVEEQLLNDIEDWWNNDGGYGNVCILVPSGKYKIVNDIRVTEVETFYHEGSLIQKTL