Basic Information | |
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Taxon OID | 3300025086 Open in IMG/M |
Scaffold ID | Ga0208157_1040335 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1299 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -12.999 | Long. (o) | -80.801 | Alt. (m) | Depth (m) | 90 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006217 | Metagenome | 378 | Y |
F027536 | Metagenome | 194 | Y |
F029123 | Metagenome | 189 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208157_10403351 | F006217 | N/A | ELLLAMVEEQNPIHKYCMSKHEHWTGRAACVQELRHAQRKMEVEELREFLKANPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKRSKC |
Ga0208157_10403352 | F029123 | AGGAG | MSYEVWFGKNGKWFGYHSFKYRMEAVDCELKYLNIFRDLTVEIRKREHGSYC |
Ga0208157_10403353 | F027536 | AGGA | MVVIAKVMPIRQVINECRRRADDAWWDGNDDEARLHEAEAKLNEDDEQKGELWCPNF |
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