Scaffold Ga0208157_1033233

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1033233
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1475
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001086	Metagenome / Metatranscriptome	782	Y
F031532	Metagenome	182	N
F093962	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10332334	F001086	AGGAGG	MKHKCTGWAIVATMERPDGTWYDETITEIDDDTASAVDTFLTEYCEDKEKDKHE
Ga0208157_10332335	F031532	AGGAG	MSNRITKKKVKTFLTLRFRKEPMMMYDDTLDVAVEVIQDFLNCDPMEIGKLQGNTYDTIYNIEREINESNS
Ga0208157_10332336	F093962	GGA	MKATVNFEWRDIDEPTFTPEEIIRKALYDAGYSVGHIFVQGVFDEDKTKFFGVDGDRLPHEEVVWKQQERMTK