Scaffold Ga0208157_1006393

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1006393
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4178
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020115	Metagenome / Metatranscriptome	226	Y
F025275	Metagenome	202	Y
F025729	Metagenome / Metatranscriptome	200	Y
F029600	Metagenome	188	Y
F032639	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100639311	F020115	N/A	MMTYEQFEVLRQWAERVANTANDTDTNIRSIDLVHDIAGILANDEHFLPRL
Ga0208157_100639313	F025729	N/A	MKDEIIARLEFFEETYAGELETWLDPVTGDYYHVPIEIVRDFDNIEKL
Ga0208157_10063936	F025275	N/A	MKYYALLHGVCGLAEGYSDTTVRWFNDLDKALEAKGKLVAILMDGNEAESCTTSTDGMESVVTFDSNEAEEEIVKIIELKPTWPESKDIREYLVWDQMNCEAPFDGDYMPTDMAVIKDLCERQEAVADTLDIESFHEFVRDIWYGNTAMFDADDLCIYYFKLPKEFKS
Ga0208157_10063937	F029600	N/A	MKYWNGEGQYQDLFDKHWKNLVPESGRADTAEGNAMRAIAKINYDIFNNGAGNIVDQVEEMDEDGEYYTDYSINRWWEEYFDDIEEFAGLNVDRLKTKILGYVQFDQDGGLSDMMDDYIDHIVLRVDNQSVTK
Ga0208157_10063938	F032639	N/A	MKKQLINEDGFYAGSELMWSLEDVLRVLNEMNMTASKKDLGRVLIASFQDNDMLMQYINDAIGETIAYMIEEGQLKTEEL