Scaffold Ga0208157_1006030

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1006030
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4324
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001655	Metagenome / Metatranscriptome	656	Y
F002858	Metagenome / Metatranscriptome	525	Y
F030067	Metagenome / Metatranscriptome	186	N
F030293	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_10060301	F030293	N/A	MIVEMLDDRTSIEALGLLPHFFERSLYIEGQSIQSVADKMDDLYHYGGFVYHLDGTIDEKGVYTSAHDDEDILDPIARVDKLGFTLWVYPYAIVGLTDNKGNQKIARFD
Ga0208157_10060302	F030067	AGGAG	MPRESWEIAHDSYYDDLEADHYDGLNDSEAWKEEEQKVIDDLIKRMQGAYNGTL
Ga0208157_10060306	F002858	AGGAG	MLIDEKSIYVVDGGDYSIYCLGYTQARTVTNDIMKADPWGGIPFVLRKDLEFSLDDRGNVVMSKSTLDKILFLASDELPKAEGEQ
Ga0208157_10060307	F001655	GGAGG	VKQPENSHTKHFGNDGPIGNDAEIIVYYEERGPAEPVLRIPFWYCKDELGMHEHFEASVHRTAKALAESYTYWPDGYVHVQTIINQEYVNIV