Scaffold Ga0208157

Basic Information
Taxon OID	3300025086 Open in IMG/M
Scaffold ID	Ga0208157_1005922 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025086 Open in IMG/M

Scaffold ID

Ga0208157_1005922 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4379
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (23.08%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4379

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (23.08%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-12.999	Long. (^o)	-80.801	Alt. (m)	Depth (m)	90
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-12.999

Long. (^o)

-80.801

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004523	Metagenome	434	Y
F022645	Metagenome	213	Y
F030052	Metagenome	186	Y
F059877	Metagenome	133	N
F072842	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100592210	F059877	N/A	MKNNKFITAAVVATLALTSCEKTDYDVQFDRDTHVKIMSDNSVSTYAVSTCTGKDTSFVVDFGVAMCINVANLPGIDDVRYDEYEFYAMLDGRKVKGFQNLKDQISDRAQGLIDGNINVQLSGHTDLAVYLLHENMYKAQFFVENGDGQIFELQLKEVY
Ga0208157_100592212	F030052	N/A	MDNNTDMKNKYIKKLIELEDLLKVHDWHYAMSDDNNYYKRGRKQFEEIWKLMDELNKNNYSTMADNLYDKYKK
Ga0208157_10059222	F004523	GGA	MSTEIRSAREALTIFKILGIKDVTTNRQRKNGTTVYELPIQQMWQTLNPKPLRFATYKAGYVRNVSEYNSSPYQINKTETVQLPGYAYDVTKRILIHGWEDRIIYLAKFIIKNYYQKPTYLMNDYVIKCLKEAYYEQNKTGLPFGEEGDMHSPDIKVIINGHRYNLS
Ga0208157_10059223	F022645	N/A	MKNTNEIEKQLQNKADKYIEQKAKEMFEIHREIARYLSSKLPNYIDYITDFSDYSKDLVANRGKYFTSSSPSSMELKYQKDLAKNYKEKLVAKYTRELIMKLDIFE
Ga0208157_10059225	F072842	N/A	MDKIRLHRELLKQQLMNYDYSDTPVNKMILVELDCSQITTQSEGPHGFTHAKSSGGTTEKLIEIMNREVSRHPEYDLIIIDKADEIY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208157_1005922

Overview

Ecosystem & Geography

Associated Families

Sequences