Scaffold Ga0208157_1000165

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000165
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41950
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (82.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012787	Metagenome	277	Y
F022109	Metagenome	216	Y
F071753	Metagenome	122	N
F106110	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100016514	F106110	N/A	MEKSKDVKINVTGVSMSGESNLNEHDRTPKNDKEKSEGEENGNSRKDD
Ga0208157_10001652	F022109	GGAG	MRYLEVESIWDKHGDCILDRRSEHQELTFKVNHNRGTSKCYLFEDQAEDIIHILSVSPCISSHYSKADYAEKERLSKTLPLNHGDVVRIKKRDNKEYTVHVNGNYSDLGYLVPIKD
Ga0208157_10001653	F071753	GGAG	MQTVLSKEIVGYGSYNSYVNKKGHPTNIQYSFERIATNNRSLHIYGWDTDTPIWNINYTEDGYNYKTVGCVTAFPMDEVQASIKTSSGVDFTVARNDPYEAFVAIVDAVSATTTEEEDQAFYQQYGY
Ga0208157_100016559	F012787	AGGAG	MSQRDNTNSGILYKNTDDWKIIQQGKLNIEGDEQRIIGVSRKNKDGQPMVELYRAIGTLKKNEDKQSEKSPNAKGVVNKVMDKGAMTISAWKETSEAGNPYTSLKVREFSSDSSYSDPNSERNVLHKEETEDEIDW