NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208157_1000083

Scaffold Ga0208157_1000083


Overview

Basic Information
Taxon OID3300025086 Open in IMG/M
Scaffold IDGa0208157_1000083 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)63514
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (18.07%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-12.999Long. (o)-80.801Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004850Metagenome / Metatranscriptome421Y
F005351Metagenome / Metatranscriptome403Y
F032680Metagenome / Metatranscriptome179Y
F033810Metagenome / Metatranscriptome176N
F073567Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0208157_100008361F073567N/AMKNLTKKQTKEITSLYEMLSNGWHYTNSPNYHKFMKAHNDLQDYKS
Ga0208157_100008363F005351N/AMYNPNSPSNWSWSKAFAEMEKTVNRAELEQQIINHLHGYKVEGKFLELSKSQQDDHYEILNQIL
Ga0208157_100008364F004850N/AMNDTYEFEIYYGEIEEPLYLTNDKEYICESMYDFMQDELGIIMNEVIYKVNKL
Ga0208157_100008371F033810N/AMSKSKQIHWNADTIDHFIFISNYADVDQVLTQVTAFVEADCELQGDDTENDLVEDLMNKIYERRYE
Ga0208157_100008372F032680N/AMSKYVSRTMQEIHDLFHHNFGGDVEEITWYLEELIPKLQDELDYYQTFNGEEND

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