Scaffold Ga0208157_1000083

Overview

Basic Information

• Taxon OID: 3300025086
• Scaffold ID: Ga0208157_1000083
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63514
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (18.07%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -12.999
  • Long. (^o): -80.801
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004850	Metagenome / Metatranscriptome	421	Y
F005351	Metagenome / Metatranscriptome	403	Y
F032680	Metagenome / Metatranscriptome	179	Y
F033810	Metagenome / Metatranscriptome	176	N
F073567	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208157_100008361	F073567	N/A	MKNLTKKQTKEITSLYEMLSNGWHYTNSPNYHKFMKAHNDLQDYKS
Ga0208157_100008363	F005351	N/A	MYNPNSPSNWSWSKAFAEMEKTVNRAELEQQIINHLHGYKVEGKFLELSKSQQDDHYEILNQIL
Ga0208157_100008364	F004850	N/A	MNDTYEFEIYYGEIEEPLYLTNDKEYICESMYDFMQDELGIIMNEVIYKVNKL
Ga0208157_100008371	F033810	N/A	MSKSKQIHWNADTIDHFIFISNYADVDQVLTQVTAFVEADCELQGDDTENDLVEDLMNKIYERRYE
Ga0208157_100008372	F032680	N/A	MSKYVSRTMQEIHDLFHHNFGGDVEEITWYLEELIPKLQDELDYYQTFNGEEND