Scaffold Ga0208792_1003583

Overview

Basic Information

• Taxon OID: 3300025085
• Scaffold ID: Ga0208792_1003583
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4224
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033796	Metagenome / Metatranscriptome	176	N
F086976	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208792_100358310	F086976	AGGTGG	MSGDKIPPIDPITGQFVRPLSGNKVYNTETELTKGLLNDEIPHELYVKLIKVYHEAYEEAPEYGFTGVGCISFAESMLQYHQDGVERRIRIPTLYDEYSFKQESNNE
Ga0208792_10035838	F033796	AGGA	MSSDENKTYKVAGVNKGKGKGVTVLDGRKRVLEEAEQSAKSLSTKYKLENISNFVAFNTHALTMLPPYSIDMEAEWNYVVEQEGQDDTPSVEINRQAEGSI