NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208298_1023602

Scaffold Ga0208298_1023602


Overview

Basic Information
Taxon OID3300025084 Open in IMG/M
Scaffold IDGa0208298_1023602 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1340
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019648Metagenome228Y
F032280Metagenome180Y
F046021Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0208298_10236022F032280N/AMADEITMKAINLLREADPSMDEVESLDKFIAHQAEVVEMYKQFKDHPMANKLKPRLTVFEESAFAFTYVYTMMKTYKREKMLANARELEMANAVIELKQELDILTKLDKGD
Ga0208298_10236023F019648N/AVTKKELDLLDRFASKYKIDCVPSEGKYDFWDFTYEWDDRKFYCEMKQRNFTLDFARDKYSEGILLEMHKYERILKRTKNEKASQGLYLNFFDDDSVLIYNLNKVSVDKWFWKTMPETTDFGRRNFIYKYITFLDYDKGKVLYI
Ga0208298_10236025F046021N/AMTRKKLTPRYNDNKAIRAKIDKLLQQNTSNVANSGTGSKLDIGDDSKVKEAWERIQAKIKEI

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