Scaffold Ga0208668_1009804

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1009804
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2112
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021088	Metagenome	220	Y
F074749	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_10098043	F074749	N/A	VYRAYLLIFLLLCACKADPPVEVIPDYGDVYFYIGCYWPNPAEVLQPAIWRCFENVETELLSGFLYLELENSNSLYFCGENLTLRSGIGMYDNLITYLTNNKYDCLHITEDKEEGNAFDWFWDPDKNVLQITWRPDEEPHKRLTLVVENSDYNQVARSTVYYKILLED
Ga0208668_10098045	F021088	N/A	VGTGWLGHRRPRQNATVGDIVICVDEARRTDVVLPFPKRFIGLVLDKSTTIYKIQVLDTGEEVFWPESATYLWKETK