Scaffold Ga0208668_1000045

Overview

Basic Information

• Taxon OID: 3300025078
• Scaffold ID: Ga0208668_1000045
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27910
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (70.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055656	Metagenome	138	Y
F068135	Metagenome	125	Y
F081887	Metagenome	114	Y
F082712	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208668_100004527	F068135	N/A	MVKKDKKFQVGDIVLVKSGAGPAIPKFHVKLIERTERRPPKDPKYIMWRARLTKPKEADRLRKEWHIPFKFPNEVETFVCETNIIKLIKADG
Ga0208668_100004531	F081887	N/A	MQIEKNTVCYTSEIGHNNFWYPSNNEVFIKEKCEVERLSWISGGSSIAIKILKSNLVPRTLSESTTKNTSPPTKNDYTIVWIERCSIS
Ga0208668_100004533	F082712	N/A	MDPSKENNKKWKKVRIFNNYEDANELRCVLLDNDDTGKLLVKVRRCGVEGRQFKVKTHFREFKGNKND
Ga0208668_100004535	F055656	AGGAGG	VEIFGIILLMNTCIFGYFTYSFIQYRKREKCRTQELNHRVQYMLDEMERDYQASSIQEEKPVTNVFREHVIEEISKQRLIYDETTGRYIKLRQIK