Scaffold Ga0208920_1006160

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1006160
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2788
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025517	Metagenome / Metatranscriptome	201	Y
F067827	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10061603	F025517	AGTAGG	VLSSNQLAPMYGINAKLPKSLFTCFMCHTTKKQEAYIWGNFAIPPKHPYEEQRICKKCAVKEHGKKNKRKLDNVIDERTKQWLKKQQ
Ga0208920_10061606	F067827	AGG	MEREGDLGNYLRFNFENAVEMIDKLTKDNNALLDKIEELEIKLYNKEMPSIKREPLQTRFAEISKEAKTAMKRFTTKLKKEINKDAKSKQSQGQPV