Scaffold Ga0208920_1001880

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1001880
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5239
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F022669	Metagenome	213	Y
F051987	Metagenome / Metatranscriptome	143	Y
F054108	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100188011	F051987	N/A	MDYIYSLLEKYGGMISCWAWNKRWVNRNDVRYRSSKSGKFYTIDKKTGQIKNE
Ga0208920_10018803	F054108	N/A	MKKKIMLFAHLVTEIDISKYKQKEYVKIVKAIYWEIFGSKK
Ga0208920_10018807	F000993	AGG	MAKLHHTEYKKNYKKYILDTIETDNEDKPLKTDQEKIKYIFDRFYSEYSWEINKVGKQKAMTDWLSGLALDITYWNDNIVELAIKMGSIEENPSAKLQARVIEKYWSFMANIILGFKK
Ga0208920_10018808	F022669	N/A	MIKTMQELKEVNKKWFTPENKRFFNDINYKVLMGAKSKTRFLIQHTYQFSDMFDGVKKAVFVVKPITTEGKILPTVETLKELNQVKQYMKGA