Scaffold Ga0208920_1001778

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1001778
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5391
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F086164	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_10017784	F041493	AGGAG	MTTQQDYYIKTIDNNEDHLYTIIFDSTSGDPLRVKTENLGYYLSKVKRESKLSGDRLIFTGEWIPSFVKAKEKIIGSPSSSVAKRVAPRSQVKAGKRRRGKRGKRK
Ga0208920_10017785	F028039	GAGG	MTLDLVAQKERWVTIVQGLKFESNWKEVLEKHLKDNNLKELPEPEWTDADPTMAYIYLPARSLKGDKVRMDKTRARMFPESIVGYLEKGGLMKLPEKVVASQSSQTKEQLPEMETEKPKREKIKLPKIGG
Ga0208920_10017787	F086164	GGAGG	MAFGHEKLTVDATVRSLTIPNDVNFAHIVVETGPIRLRIDGTDPATAVGVLVGAGDSFTVYGRDTLKGLNMVEATSTDAVINVAYGVASTGIHGVITNTAV