Scaffold Ga0208920_1001198

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1001198
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6569
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034142	Metagenome	175	Y
F037679	Metagenome	167	Y
F079940	Metagenome	115	Y
F084093	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100119812	F037679	AGGAG	MARQRIKLGKTNSKRVERTRRGFGQRMHSRPMPVHIHLRAYTPEGELVGVGQRNDEFMVALFDSNEKALCPPVVFNGAHARTQAARLASQLTGRTISF
Ga0208920_100119813	F079940	AGGAG	MTEITEIAIISIAFGITLGYLIGIINYLASNGWRFDELA
Ga0208920_10011988	F034142	N/A	MKKQFNVGDLVRFQRPLPRHLSADGISAHERYVRKHMPWNFEIGIVIANDCVQGCVVSFPSRTTSVFTLSLEVL
Ga0208920_10011989	F084093	GAGG	MNPQVGDIVQVKEKHWPTIGMHSGLVTQLIEWPPDARSVVDCVVFVTATFANPVQLQTRFVEVISRA