Scaffold Ga0208920_1000278

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000278
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13667
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041252	Metagenome / Metatranscriptome	160	Y
F062673	Metagenome	130	N
F098042	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100027812	F041252	AGGAG	MTVEKLEMCKFLSEDYAQKASDRGMDYKESYESYMERSQKRNFQDLLQHFSTVKKIPTIFKSNRNGEYMVTSDNDCNNCEDGVCKL
Ga0208920_100027821	F098042	GGGGG	MSKMGNIHYQAQEDAISGIMDKRSYLDEYGDDALDIWEEFNGEEPDDDRKQSSFWLSQQPQTDREIQTEHWADDRRIDFYG
Ga0208920_100027823	F062673	AGGAG	MTYYKYPVIEENDDSLVDLANNMGIEDLCKLINIFQDRICVFDVKNKIVHELRDTTEYFSAVLNGAGIQLSVNDGEEDE