Scaffold Ga0208920_1000264

Overview

Basic Information

• Taxon OID: 3300025072
• Scaffold ID: Ga0208920_1000264
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13960
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 105

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002566	Metagenome / Metatranscriptome	547	Y
F030879	Metagenome / Metatranscriptome	184	Y
F042378	Metagenome	158	Y
F091872	Metagenome	107	N
F093713	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208920_100026410	F002566	GGAG	MMYLKWKLSQGTSGTGPEGVIGDRGGHAEASWAADAAGYRIGYLTAPANIDGLEVWDVTTQTEAQALAFCQAIYADAEVLPDGRISAPQPDVPE
Ga0208920_100026411	F042378	GGCGG	MNILDAIAEVQQPRSRYQLIHFVLGQHDTAEMQFYQLCIELQDMGYKLRMAELNVKKTEVEIARLVETGDELDAIEAEEKQVGLEQTQIVMRGAQREIAILEDIFNECQHYTRDEIEHAQPEYWQARLTRQTNLQMMSGNVQWAQLDSMRQIGLLDDLVEAREAQLAEQVKLELAE
Ga0208920_100026421	F030879	GGAGG	MTKKKNDYTVVGNHIVLGHDPGTSFSSDMSDEQAQQLIDGGHLAAGKGPKEA
Ga0208920_10002647	F091872	N/A	VPELVASVGIIAAATISAISAVLVARLRLDYRTQNGTQVDLLREINRRTTRIEERVNDHGERIATIEGRQAAQ
Ga0208920_10002648	F093713	GGA	MEDNVNDILVRAGKTWLQTFVGLLVASWASRTINIETLDPLQELSTIAGLAFASIPAAVSALQNSLKLAKPGA