Scaffold Ga0207896_1018374

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1018374
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1221
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023483	Metagenome / Metatranscriptome	210	Y
F028800	Metagenome / Metatranscriptome	190	Y
F078595	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10183741	F023483	N/A	MNKLHYDFEDIIKIYAEALEHETGMDVNLRNVFDYDSYELTYDSLADKIIIKIKGVYVQFEMEDTDIYVVNYGNGSGWQMAYSFAI
Ga0207896_10183742	F078595	N/A	MKNKNVVISDFEIVENNLLGINTDKLINKFLELFSSDPDNMSNSKYVNKLNNFLNEINSNYICVNKLSVNDEGEIFWKFKLK
Ga0207896_10183743	F028800	N/A	MNKIEIIDGEDGEYRNVTGTYNLDNNVYEWELETDDGFTSIHFKVVIDDMGRIENVNLEDVEDSDCPAINFGEDEGIEIYDEILDFVNDNGYDFIGEEFE