Scaffold Ga0207896_1018222

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1018222
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1226
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014069	Metagenome / Metatranscriptome	266	N
F026154	Metagenome / Metatranscriptome	199	Y
F089160	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10182221	F014069	AGGAGG	METVKAPINERVATKVMPLTKWFVEQYFQTFQLMSSDPRFKALPPYNQTSCIATVIIATNNALDKSRDARKSAETLQDISKATEERKAVNE
Ga0207896_10182223	F026154	GAGG	MNGIISVVRFVTYTVGGLAIRKAWNWLIEDVDPIPGSQEFDNEYYQTKSKYIRLTKLKEEHETYRKNRRSNS
Ga0207896_10182225	F089160	N/A	LWWKKYFLKVIHLRVLYPKTGYIQIVKIYRDKKPSIRVVTIPSGSDKRELLVLNKIYGGNNG