Scaffold Ga0207896_1014961

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1014961
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1370
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y
F007947	Metagenome / Metatranscriptome	342	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10149611	F007947	N/A	CLQNQMPDVGLDDLLVIGYLVGGLAIVIYLVMDALKEK
Ga0207896_10149616	F007346	GGAG	MDENVIRGIRLSQAVEWSGQDIFEVASAAFEDANYHSFNEVFTAAWNEFQKELEDG
Ga0207896_10149617	F003073	AGGAG	MAKKLENMTQDERIAYWAAQREKERIQRRDRIAKLSLDQRVAVIKVYELVDEILDTALYPDMGGIKAITAYDLQELSDAKDRLRHEFNFDVLAP