Scaffold Ga0207896_1000835

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1000835
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6155
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F076601	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10008351	F004688	N/A	MIKEHTMPCIHMNGSGEDSLRRQYNELFCAVSDAQVKLLYDTDFHERDYYPLGDEAWDKAYQEREEVKEAMSKVYQYVKQHMHFLDYGKEPLPDE
Ga0207896_100083512	F076601	N/A	MYTTHMKANNTGRTHHERVLDARESLWNNTMKCQEQREANPIDWKASAEAGKAVFKNTK
Ga0207896_10008353	F016342	N/A	MKSRDYHVLKDDLLHKAVENKEIIKQSSQGNFGMYDVLPANIARTVSEACDDFFKSRNIRYGSAWFHDRNDRKKKIQQAKDEQRNANG