Scaffold Ga0207896_1000485

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1000485
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8186
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (11.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004688	Metagenome / Metatranscriptome	428	Y
F016342	Metagenome / Metatranscriptome	248	Y
F037476	Metagenome / Metatranscriptome	168	Y
F049999	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_10004856	F016342	N/A	MLNMFNNLQNKMKSKDYHALKDEFLRKSVENKEIIKQSSQGNFGMYDVLPANIARTVSEACDEFFKSRNIRYGSAWFHDRNDRKKKIQQAKDEQRNTNN
Ga0207896_10004857	F037476	N/A	MNNETPTIKLTGVFPKTFRVTKCESGRNDCNFEYSDEKKQVFFEVCLHGAFSLHEHFTDLGYTELAPKVEFPTWHPNHKKS
Ga0207896_10004858	F004688	N/A	MPCIHMNGSDEDRLRRQYNDLFCAVSDAQVKLLYDTDFHERDYYPLGNEAWDKAYQEREEVKEAMTKVYQYAKQHMHYLDYGKEPLPDED
Ga0207896_10004859	F049999	AGG	MPSNICITSTMERSRCQMKIKNYLVIMEEVNRLQFEVEASSEAAAIDLVYFGEAGDPTDQKVMEFNCLSVKEYIK