Scaffold Ga0207896_1000134

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1000134
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16377
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (7.41%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100013411	F006666	N/A	VNPKSHKEFRKDLADKVGVHQSVVDDFIAFYYAKVRSNLSSLVFPRINVDGLGTFYLRKGKLDKAIKKNKSILGNLAKRTYVGFAKSEDIQTNIVQMEKAMKQMELDIIKKKKFRSEK
Ga0207896_100013412	F004866	GAG	MAIVQKVELKLQTSLDITMKYQIITYCFFKDILISNSDLKFLTELAKTGKIELTKFCKSLVEKQIFKSPQSARNAITKAEKKELLFKEGNNKKTIMLNKDINVQTEGVVLLDYKVLGRESKES
Ga0207896_100013414	F005243	N/A	MSKKTNTAPLNEKDPQMSKEEMNKRREEITEFYKDNIPHLEIQADYEMLLAQIEKSRAERMQAQMFMAQQYATQKEGGVDPNSEEGKAFQEAMAQAVNPE