Scaffold Ga0207896_1000121

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207896_1000121

Scaffold Ga0207896_1000121

Overview

Basic Information
Taxon OID	3300025071 Open in IMG/M
Scaffold ID	Ga0207896_1000121 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16957
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (89.29%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F037432	Metagenome	168	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100012124	F037432	N/A	MAHNMDIKKGLYPDEPGYSDWNIGDLKKELGIEGTLTKEFTYIQPSKFHQKLMKTGDLPLTADVSYTDILVRNDYEMTKNKRYFQPKAWNVPKLMFNYHALFQLFYMEKQTNQKLFKLMQWHKKALLRHIKFLYFKYKVANEDQASKREIDEI

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