Scaffold Ga0207896_1000006

Overview

Basic Information

• Taxon OID: 3300025071
• Scaffold ID: Ga0207896_1000006
• Source Dataset Name: Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107765
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (8.60%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 50.0
  • Long. (^o): -145.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207896_100000611	F006666	N/A	MNPKKHKEFKEKIAEEVGVHQSVVDDFIAFYYAKLRKHLSNLQYPRIQVDGLGTFILRKSKLDKAIKRNKSMLGNIAKRTYNGFAKSEDIQLNIDNMEKAREQIEKSIIDKKNFKNNKNGSI
Ga0207896_100000612	F004866	GAG	MALVNKIDLKLKVNLDTCVMYQIMTYCFFKQIIISNSDLKFLMRLSKDDNIELTKFCIKLVNDNIFKSPQSARNAITKAEKKGLLKKSGINKKTISINKDMNIQKDGLVLLDYKILGNESQEA
Ga0207896_100000614	F005243	N/A	MAELNLDPNKDPQLSKEELAARREEITSFYKDNIPHLTVQAEYEDLLATIEKARAERMQAQMYLAQAYAASKEGDNAAPDSEDAKAFKEAMEKAASNIG
Ga0207896_100000636	F002047	N/A	MWDLFQVMLKKNVTPNQVLLMFGIKNGVTTPPKDTRLLDKNHLVSIGFLEHKNGVYLMTAEAKAFCVRLDNYFIKAKKKTDIQLMGKNFVDKINKYREIFPAKKLPSGKPARNNVKALGEAFRWLFQTYEYTWDEVLKATRMYVNEYRDAEYLYMQTSQYFICKQDKHRVKHSTLADYCDMIKEGVSNEDDHFKENVV