NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208667_1003040

Scaffold Ga0208667_1003040


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1003040 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5223
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020385Metagenome / Metatranscriptome224Y
F030154Metagenome186Y
F063160Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_10030405F063160GGAMIDYHVVLIDELGEEYSVTVSVPDLVENVTECVREEYPESSIVYIMPKGF
Ga0208667_10030406F020385AGGAGMTVKPSFKEILEQRQEYLDALKSNGDIYALEFLSCSFLYDNGNANISPLTTAQHSTMAKWKATTQ
Ga0208667_10030408F030154AGGAGMDLQTYTIATRDTIAQQFVPVSGFILMTIKQAQELAQEYRASGIDAVAFNTQGV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.