Scaffold Ga0208667_1002556

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1002556
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5880
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F004376	Metagenome / Metatranscriptome	441	Y
F008387	Metagenome	334	Y
F037980	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100255612	F004376	AGGGGG	MKCLDCGFNEGTLLKQFQEQPEKNYSWYELSEMTEVCASCGSENIKIEEGE
Ga0208667_100255613	F002146	GGAGG	MIKNILNFLDYVLFLAMMYFCYLGLKYSVQIEQLIIELKGGAI
Ga0208667_100255615	F008387	GAG	MESILIITKWVLLLICSVIGMVILATDPTQQSLGLILTFGCFIVFALDVARTFTN
Ga0208667_10025568	F037980	GAG	MKTKVLQLDKPKTEWVETYQQLNILATITGHEDLWHKHYPFKKWITHKYFPEIDMDKDDFPDMDFCDQEIIQEWIDETNQDFKLVSMPDQKGFYFCEDEYKNCVELNEYDSETGEFWSVNQGKWISTD