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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025070 Open in IMG/M |
| Scaffold ID | Ga0208667_1002148 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6614 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (53.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002221 | Metagenome | 581 | Y |
| F006845 | Metagenome / Metatranscriptome | 363 | Y |
| F012117 | Metagenome / Metatranscriptome | 283 | N |
| F018155 | Metagenome / Metatranscriptome | 236 | Y |
| F067646 | Metagenome | 125 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208667_100214813 | F002221 | N/A | MKTYLNESLKDKLKELRLYEVDTRIKWGNRKRIFKMVGVQFEIKFCRAEQMLKDSLFSDPVKKKLQMVEMMLRAYEQLNIKCEESGYIQIQPNTKCFNFDNKTALVCDTDSEKPVLEKIHKDEKDIMIFSIEELFRCIPNDFIRAKELLSKLDKSVNIKRVNYV |
| Ga0208667_10021485 | F018155 | AGGAG | MGQNSKAVARRREELKAEKLDKQIKTYYFQKGAGQHYREVTYMSGKVVRTDFDA |
| Ga0208667_10021486 | F067646 | AGGA | MLDWILYIIAGIFGLVAIGGLISVLAAIYILRELD |
| Ga0208667_10021488 | F006845 | N/A | MDLNSYLLQEGFEEFCRRAYERISLACEILSIVNDETYEDFKERNYATLESDYLNSIEKTIH |
| Ga0208667_10021489 | F012117 | AGGAG | MDILGGMSSSNESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPSTFKSGWGRYTKADGFEYHWDDKFGVVAPKPADDYKRAFSAWVFPQGAQHAFLWQRFTYAESSAFNTILGSFWNQMDSSSANLPVVKFEGSKPIQVGMGNSSELSFSFAKFAPRTAEFVIPQWYIDQEAPVDDTFKDPNAGLADKVQEMVDKNELSDDDIPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |