Scaffold Ga0208667_1002060

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1002060
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6804
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045773	Metagenome / Metatranscriptome	152	Y
F053312	Metagenome / Metatranscriptome	141	N
F072378	Metagenome / Metatranscriptome	121	N
F095519	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100206013	F045773	N/A	MSNVINFPKSGVSATKWFCECGHALEYWVGDDGNGYGICPHCNLGQPTEINILEGDEEE
Ga0208667_10020605	F072378	AGG	MDNLNLTKSLEDCFDYELNDEIIRFDAIIESLMTTDVQRHKIREELIDWQDGVANMVDELSTIEPYEGFREFAAMAEEMFGTEQ
Ga0208667_10020607	F053312	GGGGG	MSYKVLNDAVGLIRDETPMWEGSYQELPDKTKDGLICLWLITHPTWMDDVFPHTVSDKPLLALEAIYSEDATSRMAAAMFRDAADRNAKDVDNDAYLSEALDDFEDILDTPDFLEEIRHQLYMYLEPSMEELVMDSFLDLNHLDRLVMGSH
Ga0208667_10020608	F095519	GGA	MKINECCLNDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC