Scaffold Ga0208667_1001827

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1001827
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7394
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025614	Metagenome / Metatranscriptome	201	Y
F038249	Metagenome / Metatranscriptome	166	N
F039873	Metagenome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100182711	F039873	N/A	MSDIAPIREEAFRRAGNVCEWANCDSNKWLELAHLKDIGMGGNKARKYNVDNTAVLCKWHHDIYDGRQSMGTKVAYRELLEGYLDRHSGVS
Ga0208667_100182714	F025614	AGGA	MNKKINIDKLNIFNHPRYMKVWAQQFSKACGSDTFNVAPDTITLRYLMEKFVKDYNFHLEGLEEE
Ga0208667_100182717	F038249	AGGA	MIPSAFRGTLVPAYVKSKTQLVAWALEEFQNSDPITNWEFVRELYCHRFGGILFNLRQEGYEITTLKTKTKGLVSYYCTKVPTRTTIS