NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208667_1000799

Scaffold Ga0208667_1000799


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000799 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12639
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (28.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007366Metagenome352N
F011489Metagenome290N
F013089Metagenome274N
F030437Metagenome / Metatranscriptome185N
F067697Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100079913F007366N/AMRGTPLKETKLGQWFKIKAPKVFDLIGEIVPGADALKAISALIDNTDTSDEEKTNAKLLMEEIASADRANARNREIEITKSLGQRDWMQVFVGSAAMIIGIVMVVWAKTGVEDKEIFFHILGFAEGTLVGQVVNYYFGSAKN
Ga0208667_100079915F030437N/AMNHSQEEIWVTGKLGTKETTGYRTSIWTPVDEDDLNDNRQKYIDAGWKSYCWTKGSAGYDKYFLSKLPKEEFKHLLMVENDYGYHTMFWNIDED
Ga0208667_100079918F013089N/AMGQSKIKTIQPNGTYDSQNGLMYKFEIQLESGDGGEVSAKSQDRWSVGDEVEFEVTPSKWGDKMRLSKPGFTPNQSKANNPDIQKRIDASWAIGHAIAQESDPEKILEAAEFLLSIRSTLISKL
Ga0208667_100079922F067697GAGMKQGYYGNFFERLKIQEFRDCIIKHEEERASILEQQHKTVTRGAQDPTNVPEYDPEQARLQWRMKNNPYLIPGKNDSSESKSEA
Ga0208667_100079924F011489AGAAGMNSGSRKGWNSFLTKHYSKLVRIARRWTDSPSDLVHHTYLRCIDKRFPDGENDNPLGYFVKAMYTEATRGKFKDLYHVTDADPKEQTFENDWTKAIQREQMQLILDRLSWFDRTIFSLYLQGWNMADVSRRSGVGESTLYRSLHITRKILKDVLRNGTKED
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.