NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000377

Scaffold Ga0208667_1000377


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000377 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19941
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009843Metagenome / Metatranscriptome312Y
F019648Metagenome228Y
F032280Metagenome180Y
F050380Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100037716F032280N/AMPDQITLKAINLLREADPNLDEMNSLDKFIAHQSEVIKMMKQFEGHPQAEKLKPRLKVFEESALAFTWVHTMMLAYKREKLLANANEMEMANAVIELKQELDILTKLNKSD
Ga0208667_100037717F019648N/AVTEKELNLLDRFASKYKIDCVPCEGKYDFWDFTYEWDDRKFYCEMKQRNFTLEEAKSRYSDGLILEMHKYERILRKAKNEKGSQGLYINFFNCDSVLVFNLNKVRINSWVWKTMPETSTFGRNKFVYKYITLLEYDKGKVLYI
Ga0208667_100037729F009843N/AMKKVEIGGQRRPIRFSYLALKDICNDCNLKLNEMDQLGTEIDHVGIIAYYGLKYGAKKNGEEFKYKVRDIEQWIDNEDFGKINEIFEAFQLDQPQKKGK
Ga0208667_100037733F050380N/AMAANRTIRVQGIEDVKRGLKKLGQTSRQSRTAINKALRPAANKLARGIQSAYKREFNSNSDYKRLSGRTPTWKTIGIITARKSREPGLFVGPIARKTTPIRIKGRDSRNLPAMQIKGNAIQDPRPDVFQATARKMESQIYVQAEKDLDRLLDKMIKQAGF

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