Scaffold Ga0208667_1000377

Overview

Basic Information

• Taxon OID: 3300025070
• Scaffold ID: Ga0208667_1000377
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19941
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.21
  • Long. (^o): -77.52
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009843	Metagenome / Metatranscriptome	312	Y
F019648	Metagenome	228	Y
F032280	Metagenome	180	Y
F050380	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208667_100037716	F032280	N/A	MPDQITLKAINLLREADPNLDEMNSLDKFIAHQSEVIKMMKQFEGHPQAEKLKPRLKVFEESALAFTWVHTMMLAYKREKLLANANEMEMANAVIELKQELDILTKLNKSD
Ga0208667_100037717	F019648	N/A	VTEKELNLLDRFASKYKIDCVPCEGKYDFWDFTYEWDDRKFYCEMKQRNFTLEEAKSRYSDGLILEMHKYERILRKAKNEKGSQGLYINFFNCDSVLVFNLNKVRINSWVWKTMPETSTFGRNKFVYKYITLLEYDKGKVLYI
Ga0208667_100037729	F009843	N/A	MKKVEIGGQRRPIRFSYLALKDICNDCNLKLNEMDQLGTEIDHVGIIAYYGLKYGAKKNGEEFKYKVRDIEQWIDNEDFGKINEIFEAFQLDQPQKKGK
Ga0208667_100037733	F050380	N/A	MAANRTIRVQGIEDVKRGLKKLGQTSRQSRTAINKALRPAANKLARGIQSAYKREFNSNSDYKRLSGRTPTWKTIGIITARKSREPGLFVGPIARKTTPIRIKGRDSRNLPAMQIKGNAIQDPRPDVFQATARKMESQIYVQAEKDLDRLLDKMIKQAGF