NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208667_1000214

Scaffold Ga0208667_1000214


Overview

Basic Information
Taxon OID3300025070 Open in IMG/M
Scaffold IDGa0208667_1000214 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26824
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (71.93%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.21Long. (o)-77.52Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030885Metagenome / Metatranscriptome184Y
F031657Metagenome / Metatranscriptome182Y
F037425Metagenome / Metatranscriptome168Y
F044731Metagenome / Metatranscriptome154Y
F044732Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0208667_100021424F044731GAGMTLEEIYRKYERLTLEICTGESTHDNTLECAGAMMGQAMKLYKLCLAPEEFDALMQIISQASGLDGNADDDFPSGTLH
Ga0208667_100021425F037425GGAMKTSTVKPHLKWDGFREQYQGIIKNLINNIDICNEGFAKTGDEGYMAARKKYIEEVEQLKTFIKEKEIELGYYGDENED
Ga0208667_100021434F031657N/AMKIKKKLHFLYHIQDVGFKMLTESQAEKYKAKHGDVIWNVHKTLDLSPNLMETK
Ga0208667_100021447F044732GAGMTGKKSITLSKGNNMTDHYFVEVIAENGEILRWEALDKKQADWIYNEQVDLNGVENCKTGKTAGINCNPAHRW
Ga0208667_10002148F030885GAGMKNITDTSIHIIGSSTTKGVALPYTVQMILNDTDNHKAFRKMMSDKFYHKDISIRISKYINEASIHFRNEEDVAEFLLIAGE

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