Basic Information | |
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Taxon OID | 3300025070 Open in IMG/M |
Scaffold ID | Ga0208667_1000214 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26824 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (71.93%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -14.21 | Long. (o) | -77.52 | Alt. (m) | Depth (m) | 20 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F030885 | Metagenome / Metatranscriptome | 184 | Y |
F031657 | Metagenome / Metatranscriptome | 182 | Y |
F037425 | Metagenome / Metatranscriptome | 168 | Y |
F044731 | Metagenome / Metatranscriptome | 154 | Y |
F044732 | Metagenome / Metatranscriptome | 154 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208667_100021424 | F044731 | GAG | MTLEEIYRKYERLTLEICTGESTHDNTLECAGAMMGQAMKLYKLCLAPEEFDALMQIISQASGLDGNADDDFPSGTLH |
Ga0208667_100021425 | F037425 | GGA | MKTSTVKPHLKWDGFREQYQGIIKNLINNIDICNEGFAKTGDEGYMAARKKYIEEVEQLKTFIKEKEIELGYYGDENED |
Ga0208667_100021434 | F031657 | N/A | MKIKKKLHFLYHIQDVGFKMLTESQAEKYKAKHGDVIWNVHKTLDLSPNLMETK |
Ga0208667_100021447 | F044732 | GAG | MTGKKSITLSKGNNMTDHYFVEVIAENGEILRWEALDKKQADWIYNEQVDLNGVENCKTGKTAGINCNPAHRW |
Ga0208667_10002148 | F030885 | GAG | MKNITDTSIHIIGSSTTKGVALPYTVQMILNDTDNHKAFRKMMSDKFYHKDISIRISKYINEASIHFRNEEDVAEFLLIAGE |
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